“Step-by-Step Tutorial: Processing MS Data with msInspect” outlines a Java-based workflow for analyzing Liquid Chromatography-Mass Spectrometry (LC-MS) data, facilitating conversion into actionable features, peptides, and proteins. The tutorial covers key stages including signal preprocessing, isotopic clustering, multi-run alignment, and integration with the Accurate Mass and Time (AMT) tag pipeline. For detailed documentation on this process, visit PMC. ACS Publications
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